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Relationship intelligence

See how biological AI models connect.

Explore model lineages, foundation-model dependencies, benchmark peers, open reimplementations, workflow complements and platform integrations without reducing the ecosystem to a flat list.

51connected nodes43visible relationships
Structure PredictionProtein & Binder DesignSmall-Molecule & ChemistryGenomics, DNA & RNAVirtual Cells & Single-CellPlatforms, Data & InfraAI-Native Discovery Cos.Antibodies & BiologicsProtein Foundation & RepresentationRNA Models & DesignTissue, Pathology & ImagingSpatial & Tissue SystemsAlphaFold 2 / 3RoseTTAFold / All-AtomOpenFoldESMFoldChai-1 / Chai-2Boltz-1 / Boltz-2ProtenixRFdiffusionProteinMPNN / LigandMPNNESM3AlphaProteoNVIDIA BioNeMoDiffDockEvo / Evo 2AlphaGenomeEnformerAlphaMissenseNucleotide TransformerHyenaDNAState / StackCZI Virtual Cells (rBio, TranscriptFormer)scGPTRecursion (LOWE + Phenomics)ExscientiaValence Labs (MolGPS / LOWE)BoltzGenRFantibodyESM-2xTrimoPGLMUni-Mol / Uni-Mol2MolMIMMegaMolBARTDNABERT-2CaduceusBorzoiRiNALMoRNA-FMUNI-RNAUniversal Cell Embeddings (UCE)TranscriptFormerSCimilarityHelixFold3UNI / UNI2CONCHTITANH-OptimusNicheformerNovaeAIDO Cell 1.0AIDO.TissueGenBio-PathFM20122026
Structure Prediction · 2020

AlphaFold 2 / 3

The model that solved the 50-year protein-folding problem.

Google DeepMind

Recorded relationships

Open ReimplementationOpenFold

OpenFold reimplements the AlphaFold architecture for trainable open research.

Architectural LineageChai-1 / Chai-2

Chai belongs to the post-AlphaFold generation of multimodal complex predictors and design systems.

Architectural LineageBoltz-1 / Boltz-2

Boltz provides an open AlphaFold 3-class complex-prediction lineage.

Open ReimplementationProtenix

Protenix is an open, trainable AlphaFold 3-style reproduction.

Workflow ComplementAlphaProteo

AlphaProteo extends DeepMind's structure work into target-conditioned binder design.

Open ReimplementationHelixFold3

HelixFold3 is an open academic AF3-class biomolecular structure-prediction effort.

Shared OrganizationAlphaGenome

Both records are associated with Google DeepMind.

Shared OrganizationEnformer

Both records are associated with Google DeepMind.

Shared OrganizationAlphaMissense

Both records are associated with Google DeepMind.

Open model passport

Edges are either explicitly curated scientific or product lineages, or same-organization relationships derived from the dataset. They do not imply technical compatibility or endorsement.