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Genome understanding & design · Peer-reviewed capability · 2026-03-01

Genome-scale generative biology

Can a foundation model read, predict and design biological sequence continuously from single nucleotides to megabase-scale genomes?

What researchers are trying

Evo 2 uses a 40-billion-parameter long-context architecture trained on more than nine trillion nucleotides with a one-megabase context window.

Why it matters

Genome-scale models could connect regulatory elements, genes, mobile elements and whole systems while supporting variant prediction and sequence design.

Evidence boundary

Generative plausibility is not equivalent to biological viability, function or safety. Long generated sequences require extensive synthesis, containment and functional review.

Organizations represented

Arc Institute · Stanford · NVIDIA

Demonstrated evidence

What has actually been shown.

  • Nature publication and open model, code and integration resources reported by Arc Institute.

Unresolved questions

  • What biological constraints are learned versus memorized?
  • How should whole-genome designs be evaluated before synthesis?
  • Can mechanistic interpretability keep pace with model scale?

Signals to watch next

  • Evo Designer experiments
  • Genome-scale wet-lab tests
  • Interpretability tools
  • Responsible-release controls
Connected evidence graph

Related BioAtlas model passports.

Evo / Evo 2

A genomic foundation model that reads and writes DNA at scale.

4/7 evidence fields documented

HyenaDNA

Long-context genomics without attention's quadratic cost.

3/7 evidence fields documented

NVIDIA BioNeMo

The GPU-accelerated toolkit that ships biology's foundation models.

2/7 evidence fields documented
Primary and evaluation sources

Inspect the evidence directly.